Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UCEC | rs7201109 | chr16:30838007 | T/C | 8.85E-9 | 172 | 4.5 | 18.03 | 22.8 | KM Plot |
UCEC | rs7216303 | chr17:65060773 | A/G | 8.23E-6 | 173 | 22.67 | 22.57 | 16.2 | KM Plot |
UCEC | rs722686 | chr14:75382710 | G/A | 0 | 171 | 22.8 | 19.57 | 1.03 | KM Plot |
UCEC | rs722687 | chr14:75382766 | C/T | 0 | 171 | 22.8 | 19.57 | 1.03 | KM Plot |
UCEC | rs7256434 | chr19:316040 | A/G | 5.65E-6 | 174 | 24.07 | 19.1 | 14.57 | KM Plot |
UCEC | rs72680191 | chr14:33985223 | C/T | 0 | 172 | 22.03 | 27.33 | 1.67 | KM Plot |
UCEC | rs72703938 | chr4:183627375 | G/A | 1.58E-9 | 170 | 22.6 | 22.82 | 13.1 | KM Plot |
UCEC | rs72703944 | chr4:183637273 | A/G | 1.3E-9 | 171 | 22.63 | 22.82 | 13.1 | KM Plot |
UCEC | rs72704473 | chr5:1811539 | C/T | 4.22E-5 | 166 | 22.6 | 19.17 | 14.23 | KM Plot |
UCEC | rs72750438 | chr9:95019350 | A/G | 0 | 174 | 22.57 | 22.7 | 1.67 | KM Plot |
UCEC | rs72917405 | chr2:74091097 | T/C | 1.21E-5 | 171 | 22.7 | 21.1 | 18.47 | KM Plot |
UCEC | rs72921498 | chr11:62113090 | C/T | 0.000102 | 172 | 22.75 | 21.07 | 4.5 | KM Plot |
UCEC | rs72921501 | chr11:62115622 | A/T | 1.02E-11 | 173 | 22.6 | 20.72 | 4.33 | KM Plot |
UCEC | rs72923207 | chr11:62117959 | A/G | 1.3E-11 | 172 | 22.57 | 26.9 | 4.33 | KM Plot |
UCEC | rs72923263 | chr11:62161170 | C/G | 1.06E-11 | 173 | 22.57 | 26.27 | 4.33 | KM Plot |